AGVD

Releases

Releases & Features

Here we document features added and changes to the AGVD dataset and annotations. This resource is intended for citation when referencing the state of AGVD at query time, including features, statistics, and annotations for each release version. External references (such as Cellbase annotations) are also included with appropriate citations.

AGVD 1.0 AGVD 0.9

2024-10-06 (AGVD 1.0)▼

Features:

Filter file upload
Display frequencies in histogram and table
Added dbSNP matches
Export of results to text file
Variant details page with frequency table

Genotypes:

Joint-called callset 24A

Annotations:

Externally fetched Cellbase annotations.
Two sample clustering approaches
Manual assignment of samples to one of 6 African regions based on the sample’s country
Computational assignment of samples’ countries to one of 5 clusters using K-means

2024-04-29 (AGVD 0.9)▼

Features:

Search by MAF, gene name, region, variant ID
Display frequencies in histogram
Map of countries where variant was observed

Genotypes:

Joint-called callset 24A

Annotations:

Externally fetched Cellbase[1] annotations.
Two sample clustering approaches
Manual assignment of samples to one of 6 African regions based on the sample’s country
Computational assignment of samples’ countries to one of 5 clusters using K-means

AfriGen-D is funded by NIH Common Fund Award / NHGRI Grant Number 5U24HG012750-02

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